Refereed Archival Journal Publications

S.K. VanOosten, E. Yuca, B.T. Karaca, K. Boone, M.L. Snead, P. Spencer, C. Tamerler "Biosilver nanoparticle interface offers improved cell viability", Surface Innovations, 4(3) 121-132 (2016)

X. Wu, S. Mahalingam, S.K. VanOosten, C. Wisdom, C. Tamerler, M. Edirisinghe "New Generation of Tunable Bioactive Shape Memory Mats Integrated with Genetically Engineered Proteins", Macromolecular Bioscience, (2016) Feature Cover

P.M. Arnold, Z. Ghogawala, C. Tamerler "Vancomycin, bone growth, and wound healing", Journal of Neurosurgery: Spine, 25(2) 145-146 (2016)

C. Wisdom, S.K. VanOosten, K. Boone, D. Khvostenko, P.M. Arnold, M.L. Snead, C. Tamerler "Controlling the Biomimetic Implant Interface: Modulating Antimicrobial Activity by Spacer Design", Journal of Molecular and Engineering Materials, 4(1) (2016)

D. Carson, M. Hnilova, X. Yang, C.L. Nemeth, J.H. Tsui, A.S.T. Smith, A. Jiao, M. Regnier, C.E. Murry, C. Tamerler, DH Kim, "Nanotopography-Induced Structural Anisotropy and Sarcomere Development in Human Cardiomyocytes Derived from Induced Pluripotent Stem Cells", ACS Applied Materials and Interfaces, 8(34) 21923-21932 (2016)

H. Yazici, M.B. O`Neill, T. Kacar, B.R. Wilson, E.E. Oren, M. Sarikaya, C. Tamerler, "Engineered chimeric peptides as antimicrobial surface coating agents towards infection-free implants", ACS Applied Materials and Interfaces, 8(8) 5070-5081 (2016)

E. Mozioglu, M. Akgoz, T. Kocagoz, C. Tamerler, "Detection of nuclease activity using a simple fluorescence based biosensor", Analytical Methods, 8(20) 4017-4021 (2016) Cover

E. Mozioglu, O. Gokmen, C. Tamerler, Z.T. Kocagoz, M. Akgoz, "Selection of Nucleic Acid Aptamers Specific for Mycobacterium tuberculosis", Applied Biochemistry and Biotechnology, 178(4) 849-864 (2016)

C. Tamerler, "Surfaces and Their Interfaces Meet Biology at the Bio-Interface", JOM, 67(11) 2480-2482 (2015)

F.S. Utku, E. Seckin, G. Goller, C. Tamerler, M. Urgen, "Electrochemically designed interfaces: Hydroxyapatite coated macro-mesoporous titania surfaces", Applied Surface Science, 350, 62-68 (2015)

S. Zhang, B.T. Karaca, S.K. VanOosten, E. Yuca, S. Mahalingam, M. Edirisinghe, C. Tamerler, "Coupling infusion and gyration for the nanoscale assembly of functional polymer nanofibers integrated with genetically engineered proteins", Macromolecular Rapid Communications, 36(14), 1322-1328 (2015) Cover

M.J. Penna, M. Mijajlovic, C. Tamerler, M.J. Biggs, "Molecular-level understanding of the adsorption mechanism of a graphite-binding peptide at the water/graphite interface", Soft Matter, 11(26), 5192-5203 (2015) Cover

F.S. Utku, E. Yuca, E. Seckin, G. Goller, A.Y. Karatas, M. Urgen, C. Tamerler, "Protein Mediated Hydroxyapatite Composite Layer Formation on Nanotubular Titania", Bioinspired, Biomimetic and Nanobiomaterials, 4(2) 155-165 (2015)

D.T. Yucesoy, M. Hnilova, K. Boone, P.M. Arnold, M.L. Snead, C. Tamerler, "Chimeric Peptides as Implant Functionalization Agents for Titanium Alloy Implants with Antimicrobial Properties", JOM, 67(4), 754-766 (2015)

Y. Zhou, M.L. Snead, C. Tamerler, "Bio-inspired hard-to-soft interface for implant integration to bone", Nanomedicine: Nanotechnology, Biology and Medicine, 11(2), 431-434 (2015)

D.T. Yucesoy, B.T. Karaca, S. Cetinel, B.H. Caliskan, E. Adali, N.G. Karaguler, C. Tamerler, "Direct Bioelectrocatalysis at the Interfaces by Genetically Engineered Dehydrogenase", Bioinspired, Biomimetic and Nanobiomaterials, 3, 1-11 (2014)

F.S. Utku, E. Seckin, G. Goller, C. Tamerler, M. Urgen, "Carbonated hydroxyapatite deposition at physiological temperature on ordered titanium oxide nanotubes using pulsed electrochemistry", Ceramics International, 40(10), 15479-15487 (2014)

U.O.S. Seker, B. Wilson, J.L. Kulp, J.S. Evans, C. Tamerler, M. Sarikaya, "Thermodynamics of Engineered Gold Binding Peptides: Establishing the Structure-Activity Relationships", Biomacromolecules, 15(7), 2369-2377 (2014)

B.K. Balcioglu, A. Ozdemir-Bahadir, D. Hinc, C. Tamerler, B. Erdag, “Cost effective filamentous phage based immunization nanoparticles displaying a full-length hepatitis B virus surface antigen”, Advances in Bioscience and Biotechnology, 5(1), 46-53 (2014)

S. Cetinel, H.B. Caliskan, D.T. Yucesoy, E. Yuca, S. Donatan, M. Urgen, N. Gul-Karaguler, C. Tamerler, “Addressable Self Immobilization of Lactate Dehydrogenase Across Multiple Lenght Scales”, Biotechnology Journal, 8(2), 262-272 (2013)

E. Mozioglu, M. Akgoz, C Tamerler, Z.T. Kocagoz, “A simple guanidium isothiocyanate method for bacterial genomic DNA isolation”, Turkish Journal of Biology, 38(1), 125-129 (2013)

S. Corni, M. Hnilova, C. Tamerler, M. Sarikaya, “Conformational Behavior of Genetically-Engineered Dodecapeptides as a Determinant of Binding Affinity for Gold”, The Journal of Physical Chemistry C, 117(33), 16990-17003 (2013)

H. Yazici, H. Fong, B. Wilson, E.E. Oren, F. Amos, J.S. Evans, H. Zhang, ML. Snead, M. Sarikaya, C. Tamerler, “Biological Response on Titanium Implant Surface Functionalized with modular peptides”, ACTA Biomaterilia, 9(2), 5341-5352 (2013)

M. Hnilova, X. Liu, E. Yuca, C. Jia, B. Wilson, A. Y. Karatas, F. Ohuchi, K. Kitamura, C. Tamerler, “Multifunctional Protein Enabled Patterning on Arrayed Ferroelectric Materials”, ACS Applied Materials and Interfaces, 4(4), 1865-1871 (2012)

M. Gungormus, E.E.Oren, J.A. Horst, H. Fong, M. Hnilova, M.J. Somerman, R. Samudrala, M.L. Snead, C. Tamerler, M. Sarikaya, “Cementomimetics – Constructing a cemetnum like biomineralized microlayer via amelogenin-derived peptides”, International Journal of Oral Science, 4(2), 69-77 (2012) Cover

S. Cetinel, S. Dincer, A. Cebeci, E.E. Oren, J.D. Whitekar, D. Schwartz, N. Gul-Karaguler, M. Sarikaya, C. Tamerler, “Peptides to Bridge Biological-Platinum Materials Interface”, Bioinspired, Biomimetic and Nanobiotechnology, 1(3), 143-153 (2012)

M. Kahraman, E.B. Ordu, K. Yesiladali, N.G. Karaguler, C. Tamerler, “Improved Candida Methylica Formate Dehydrogenase Fermentation through Statistical Optimization of Low-Cost Culture Media”, Preparative Biochemistry and Biotechnology, 42(6), 507-519 (2012)

R.H. Sedlak, M. Hnilova, C. Grosh, H. Fong, F. Baneyx, D. Schwartz, M. Sarikaya, C. Tamerler, B. Traxler. “Interactions of bacteria and heavy metals: An engineered E. coli silver binding protein promotes silver tolerance” Applied and Environmental Microbiology, 78(7), 2289-2296 (2012) Cover

S. Donatan, M. Sarikaya, C. Tamerler, M. Urgen, “Effect of Solid Surface Charge on the Binding Behaviour of a Metal-Binding Peptide”, Journal of the Royal Society Interface, 9(75), 2688-2695 (2012)

J.J. Kruzic, N. Rahbar, P.Y. Chen, C. Tamerler, “Editorial on the special issue-7th TMS Symposium on Biological Materials Science”, Journal of the Mechanical Behavior of Biomedical Materials, 7, 1-2 (2012)

M. Hnilova, C.R. So, E.E. Oren, B.R. Wilson, T. Kacar, C. Tamerler, M. Sarikaya, “Peptide-Directed Co-Assembly of Nanoprobes on Multimaterial Patterned Surfaces”, Soft Matter, 8(16), 4327-4334 (2012) Cover (back)

M. Hnilova, B.T. Karaca, J. Park, C. Jia, B.R. Wilson, M. Sarikaya, C. Tamerler, “Fabrication of Hierarchical Hybrid Structures Using Bio-Enabled Layer-by-Layer Self-Assembly”, Biotechnology and Bioengineering, 109(5), 1120-11230 (2012)

C.R. So, Y. Hayamizu, H. Yazici, C. Gresswell, D. Khatayevich, C. Tamerler, M. Sarikaya, “Controlling Self-Assembly of Engineered Peptides on Graphite by Rational Mutation”, ACS Nano, 6(2), 1648-1656 (2012) Cover

O. Gunduz, Z. Ahmad, E. Stride, C. Tamerler, M. Edirisinghe, “Bioinspired Bubble Design for Particle Generation”, Journal of Royal Society of Interface, 9(67), 389-395 (2012)

M. Hnilova, D. Khatayevich, A. Carlson, E.E. Oren, C. Gresswell, S. Zheng, F. Ohuchi, M. Sarikaya, and C. Tamerler, “Single-Step Fabrication of Patterned Gold Film Array by an Engineered Multi-Functional Peptide”, Journal of Colloid and Interface Science, 365(1), 97-102 (2012)

J.S. Lee, T. Kuroha, M. Hnilova, D. Khatayevich, M.M. Kanaoka, J.M. McAbee, M. Sarikaya, C. Tamerler, and K.U. Torii, “Direct Interaction of Ligand-Receptor Pairs Specifying Stomatal Patterning”, Genes and Development, 26(2), 126-136 (2012) Cover

B. Erdag, B.K. Balcioglu, A.O. Bahadir, M. Serhatli, O. Kacar, A. Bahar, U.O. Seker, E. Akgun, A. Ozkan, T. Kilic, C. Tamerler, K. Baysal, “Identification of Novel Neutralizing Single-Chain Antibodies against Vascular Endothelial Growth Factor Receptor 2”, Biotechnology and Applied Biochemistry, 58(6), 412-244 (2011)

U.O. Seker, G. Zengin, C. Tamerler, M. Sarikaya, H.V. Demir, 'Assembly Kinetics of Nanocrystals via Peptide Hybridization”, Langmuir, 27(8), 4867-4872 (2011)

E. Yuca, A.Y. Karatas, U.O. Seker, M. Gungormus, G. Dinler-Doganay, M. Sarikaya, C. Tamerler, “In Vitro Labeling of Hydroxyapatite Minerals by an Engineered Protein”, Biotechnology and Bioengineering, 108(5), 1021-1030 (2011)

H.V. Demir, U.O. Seker, G. Zengin, E. Mutlugun, E. Sari, C. Tamerler, M. Sarikaya, “Spatially Selective Assembly of Quantum Dot Light Emitters in an LED Using Engineered Peptides”, ACS Nano, 5(4), 2735-2741 (2011)

R.H. Sedlak, M. Hnilova, E. Gachelet, L. Przybyla, D. Dranow, T. Gonen, M. Sarikaya, C. Tamerler, B. Traxler, “An Engineered DNA-Binding Protein Self-Assembles Metallic Nanostructures”, ChemBioChem, 11(15), 2108-2112 (2010)

R. Notman, E.E. Oren, C. Tamerler, M. Sarikaya, R. Samudrala, T.R. Walsh, “Solution Study of Engineered Quartz Binding Peptides Using Replica Exchange Molecular Dynamics”, Biomacromolecules, 11(12), 3266-3274, (2010)

A. Dezieck, O. Acton, K. Leong, E.E. Oren, H. Ma, C. Tamerler, M. Sarikaya, A.K.Y. Jen, “Threshold Voltage Control in Organic Thin Film Transistors with Dielectric Layer Modified by a Genetically Engineered Polypeptide”, Applied Physics Letters, 97(1), 0133307 (2010)

C. Tamerler, D. Khatayevich, M. Gungormus, T. Kacar, E.E. Oren, M. Hnilova, M. Sarikaya, “Molecular Biomimetics: GEPI-Based Biological Routes to Technology”, Biopolymer Peptide Science, 94(1), 78-94 (2010)

E.E. Oren, R. Notman, I.W. Kim, J.S. Evans, T.R. Walsh, R. Samudrala, C. Tamerler, M. Sarikaya, “Probing the Molecular Mechanisms of Quartz-Binding Peptides”, Langmuir, 26(13), 11003-11009 (2010)

M. Gungormus, M. Branco, H. Fong, J.P. Schneider, C. Tamerler, M. Sarikaya, “Self Assembled Bi-Functional Peptide Hydrogels with Biomineralization-Directing Peptides”, Biomaterials, 31(28), 7266-7274 (2010)

K. Leong, Y.C. Chen, D.J Masiello, M.T. Zin, M. Hnilova, H. Ma, C. Tamerler, M. Sarikaya, D.S. Ginger, A.K.Y. Jen, “Cooperative Near-Field Surface Plasmon enhanced Quantum Dot Nanoarrays”, Advanced Functional Materials, 20(16), 2675-2682 (2010) Cover (Inside)

D. Khatayevich, M. Gungormus, H. Yazici, C. So, S. Cetinel, H. Ma, A. Jen, C. Tamerler, M. Sarikaya, “Biofunctionalization of Materials for Implants Using Engineered Peptides”, ACTA BioMaterlia, 6(12), 4634-4641 (2010)

T. Kacar, M.T. Zin, C. So, B. Wilson, H. Ma, N. Gul-Karaguler, A.K. Jen, M. Sarikaya, C. Tamerler, “Directed Self-Immobilization of Alkaline Phosphatase on Micro-Patterned Substrates Via Genetically Fused Metal-Binding Peptide”, Biotechnology and Bioengineering, 103(4), 696-705 (2009)

C. Tamerler, M. Sarikaya, “Genetically Designed Peptide-Based Molecular Materials”, ACS Nano, 3(7), 1606-1615 (2009)

C.R. So, C. Tamerler, M. Sarikaya, “Adsorption, Diffusion, and Self-Assembly of an Engineered Gold-Binding Peptide on Au(111) Investigated by Atomic Force Microscopy”, Angewandte Chemie International Edition Engl, 48(28), 5174-5177 (2009) Cover (Inside)

E. Ucisik-Akkaya, E. Onur, K. Yesiladali, T. Ozturk, E. Ubay-Cokgor, D. Orhon, C. Tamerler, Z.P. Cakar, “Enhanced Polyhydroxyalkanoate production by Paracoccus pantotrophus”, Fresenius Environmental Bulletin, 18 (11), 2013-2022 (2009)

C. Tamerler, M. Sarikaya, “Molecular Biomimetics: Nanotechnology and Bionanotechnology Using Genetically Engineered Peptides”, Philosophical Transactions-A Math Phys Eng Sci, 367(1894), 1705-1726 (2009)

U.O. Seker, B. Wilson, D. Sahin, C. Tamerler, M. Sarikaya, “Quantitative Affinity of Genetically Engineered Repeating Polypeptides to Inorganic Surfaces”, Biomacromolecules, 10(2), 250-257 (2009)

Z.P. Cakar, C. Alkim, B. Turanli, N. Tokman, S. Akman, M. Sarikaya, C. Tamerler, L. Benbadis, J.M. Francois, “Isolation of Cobalt Hyper-Resistant Mutants of Saccharomyces Cerevisiae by in vivo Evolutionary Engineering Approach”, Journal of Biotechnology, 143(2), 130-138 (2009)

C.R. So, J.L. Kulp, E.E. Oren, H. Zareie, C. Tamerler, J.S. Evans, M. Sarikaya, “Molecular Recognition and Supramolecular Self-Assembly of a Genetically Engineered Gold Binding Peptide on Au{111}”, ACS Nano, 3(6), 1525-1531 (2009)

T. Kacar, J. Ray, M. Gungormus, E.E. Oren, C. Tamerler, M. Sarikaya, "Quartz Binding Peptides as Molecular Linkers towards Fabricating Multifunctional Micro-patterned Substrates", Advanced Materials, 21(3), 295-299 (2009) Cover

U.O. Seker, T. Catal, Y. Taptik, C. Tamerler, H. Bermek, “Enhanced Production of Manganese-Peroxidase by the White Rot Fungus Bjerkandera adusta Using Media Engineering”, Biotechnology and Biotechnological Equipment, 22(3), 844-848 (2008)

J.H. Wei, T. Kacar, C. Tamerler, M. Sarikaya, D.S. Ginger, “Nanopatterning Peptides as Bifunctional Inks for Templated Assembly”, SMALL, 5(6), 689-693 (2009)

S. Donatan, H. Yazici, H. Bermek, M. Sarikaya, C. Tamerler, M. Urgen, “Physical Elution in Phage Display Selection of Inorganic-Binding Peptides", Materials Science and Engineering C: Biomimetic and Supramolecular Systems, 29(1), 14-19 (2009)

M. Hnilova, E.E. Oren, U.O. Seker, B.R. Wilson, S. Collino, J.S. Evans, C. Tamerler, M. Sarikaya, “Effect of Molecular Conformations on the Adsorption Behavior of Gold-Binding Peptides”, Langmuir, 24(21), 12440-12445 (2008)

E. Arslan, M.C. Igdil, H. Yazici, C. Tamerler, H. Bermek, L. Trabzon, “Mechanical Properties and Biocompatibility of Plasma-Nitrided Laser-Cut 316l Cardiovascular Stents”, Journal of Materials Science – Materials in Medicine, 19(5), 2079-2086 (2008)

J.S. Evans, R. Samudrala, T.R. Walsh, E.E. Oren, C. Tamerler, “Molecular Design of Inorganic-Polypeptides”, MRS Bulletin, 33(5), 514-518 (2008)

S. Dincer, C. Tamerler, M. Sarikaya, E. Piskin, “Photoresponsive peptide-azobenzene conjugates that specifically interact with platinum surfaces”, Surface Science, 602(10), 1752-1762 (2008)

C. Tamerler, M. Sarikaya, “Molecular Biomimetics: Genetic Synthesis, Assembly, and Formation of Materials Using Peptides”, Guest Editors, MRS Bulletin, 33(5), 504-510 (2008) Cover

M. Gungormus, H. Fong, I.W. Kim, J.S. Evans, C. Tamerler, M. Sarikaya, “Regulation of in vitro Calcium Phosphate Mineralization by Combinatorially Selected Hydroxyapatite-Binding Peptides”, Biomacromolecules, 9(3), 966-973 (2008)

E.E. Oren, C. Tamerler, D. Sahin, M. Hnilova, U.O. Seker, M. Sarikaya, R. Samudrala, “A Novel Knowledge-Based Approach to Design Inorganic-Binding Peptides”, Bioinformatics, 23(21), 2816-2822 (2007)

U.O. Seker, B. Wilson, S. Dincer, I.W. Kim, E.E. Oren, J.S. Evans, C. Tamerler, M. Sarikaya, “Adsorption Behavior of Linear and Cyclic Genetically Engineered Platinum Binding Peptides”, Langmuir, 23(15), 7895-7900 (2007)

C. Tamerler, M. Sarikaya, “Molecular Biomimetics: Utilizing Nature's Molecular Ways in Practical Engineering”, ACTA Biomater, 3(3), 289-299 (2007)

C. Tamerler, D. Sahin, T. Kacar, H. Fong, M. Sarikaya, “Genetically engineered polypeptides for inorganics: A utility in biological materials science and engineering”, Materials Science and Engineering-C: Biomimetic and Supramolecular Systems, 27(3), 558-564 (2007)

N. Suzuki, L. Gamble, C. Tamerler, M. Sarikaya, D.G. Castner, F.S. Ohuchi, “Adsorption of genetically engineered proteins studied by time-of-flight secondary ion spectrometry (TOFSIMS)”, Part A: Data acquisition and Principla Component Analysis, Surface and Interface Analysis, 39(5), 419-426 (2007)

M.T. Zin, A.M. Munro, M. Gungormus, N.Y. Wong, H. Ma, C. Tamerler, D.S. Ginger, M. Sarikaya, A.K.Y Jen, “Peptide-mediated surface-immobilized quantum dot hybrid nanoassemblies with controlled photoluminescence”, Journal of Materials Chemistry, 17(9), 866-872 (2007)

G. Insel, G. Celikyilmaz, E. Ucisik-Akkaya, K. Yesiladali, Z.P. Cakar, C. Tamerler, D. Orhon, “Respirometric Evaluation and Modeling of Glucose Utilization by Escherichia coli under Aerobic and Mesophilic Cultivation Conditions”, Biotechnology and Bioengineering, 96(1), 94-105 (2007)

C. Tamerler, M. Duman, E.E. Oren, M. Gungormus, X. Xiong, T. Kacar, B.A. Parviz, M. Sarikaya, “Materials Specificity and Directed Assembly of a Gold-Binding Peptide”, SMALL, 2(11), 1372-1378 (2006)

C. Tamerler, E.E. Oren, M. Duman, E. Venkatasubramanian, M. Sarikaya, “Adsorption Kinetics of an Engineered Gold Binding Peptide by Surface Plasmon Resonance Spectroscopy and a Quartz Crystal Microbalance”, Langmuir, 22(18), 7712-7718 (2006)

O. Ince, M. Kolukirik, Z. Cetecioglu, O. Eyice, C. Tamerler, B. Kasapgil-Ince, “Methanogenic and Sulphate Reducing Bacterial Population Levels in a Full-Scale Anaerobic Reactor Treating Pulp and Paper Industry Wastewater Using Fluorescence in Situ Hybridisation”, Water Science and Technology, 55(10), 183-191 (2007)

H.I. Boyaci, D. Bas, F.C. Dudak, A. Topcu, A. Saldamli, U.O. Seker, C. Tamerler, “Statistical modelling of beta-galactosidase inhition during lactose hydrolysis”, Food Microbiology, 20(1), 1-13 (2006)

S.K. Yesiladali, G. Pekin, H. Bermek, I.A. Alaton, D. Orhon, C. Tamerler, “Bioremediation of textile azo dyes by Trichophyton rubrum LSK-27”, World Journal of Microbiology and Biotechnology, 22(10), 1027-1031 (2006)

A. Akar, E.U. Akkaya, S.K. Yesiladali, G. Celikyilmaz, E.U. Cokgor, C. Tamerler, D. Orhon, Z.P. Cakar, “Accumulation of Polyhydroxyalkanoates by Microlunatus phosphovorus under Various Growth Conditions”, Journal of Industrial Microbiology and Biotechnology, 33(3), 215-220 (2006)

T. Aloglu, C. Tamerler, U. Sauer, Z.P. Cakar, “Evolutionary Engineering of Osmotolerant Saccharomyces cerevisiae”, Journal of Biotechnology, 118, 9 (2005)

E.E. Oren, C. Tamerler, M. Sarikaya, “Metal Recognition of Septapeptides Via Polypod Molecular Architecture”, Nano Letters, 5(3), 415-419 (2005)

N. Kantarci, C. Tamerler, M. Sarikaya, T. Haliloglu, P. Doruker, “Molecular Dynamics simulations on constraint metal binding peptides”, Polymer, 46(12), 4307-4313 (2005)

Z.P. Cakar, U.O. Seker, C. Tamerler, M. Sonderegger, U. Sauer, “Evolutionary Engineering of Multiple-Stress Resistant Saccharomyces cerevisiae”, FEMS Yeast Research, 5(6-7), 569-578 (2005)

M. Sarıkaya, C. Tamerler, D.T. Schwartz, F. Baneyx, “Materials Assembly and Formation Using Engineered Polypeptides”, Annual Review of Materials Research, 34, 373-408 (2004)

H. Bermek, I. Gulseren, K. Li, H. Jung, C. Tamerler, “The effect of fungal morphology in ligninolytic enzyme production by a recently isolated wood-degrading fungus Tricophyton rubrum LSK-27”, World Journal of Microbiology and Biotechnology, 20(4), 345-349 (2004)

H. Bermek, H. Yazıcı, M.H. Ozturk, C. Tamerler, H. Jung, K. Li, K.M. Brown, H. Ding, F. Xu, “Purification and characterization of a manganese peroxidases from wood-degrading fungus Trichophyton rubrum LSK-27”, Enzyme and Microbial Technology, 35(1), 87-92 (2004)

B. Kepenek, U.O.S. Seker, A.F. Cakır, M. Urgen, C. Tamerler, “Photocatalalytic Bactericidal Effect of TiO2 Thin Film Produced by Cathodic Arc Deposition Method”, Bioceramics Key Engineering Materials, 16(254-256), 463-466 (2004)

M. Sarikaya, C. Tamerler, A.K. Jen, K. Schulten, F. Baneyx, “Molecular Biomimetics: Nanotechnology through Biology”, Nature Materials, 2(9), 577-585 (2003) Cover

C. Tamerler, S. Dincer, D. Heidel, H. Zareie, M. Sarikaya, “Biomimetic multifunctional molecula coatings using engineered proteins”, Progress in Organic Coatings, 47(3-4), 267-27 (2003)

E. Dulekgurgen, K. Yesiladali, S. Ovez, C. Tamerler, N. Artan, D. Orhon, “Conventional Morphological and Functional Evaluation of the Microbial Populations in a Sequencing Batch Reactor Performing EBPR”, Journal of Environmental Science and Health-A, Tox Hazard Subst Environ Eng, 38(8), 1499-1515 (2003)

S. Kara, C. Tamerler, E. Arda, O. Pekcan, “Photon Transmission Study on Swelling of κ-Carrageenan Gels Prepared in Various Concentrations”, International Journal of Biological Macromolecules, 33(4-5), 235-243 (2003)

S. Kara, C. Tamerler, H. Bermek, O. Pekcan, “Hysteresis during sol-gel and gel-sol phase transititons of κ-carrageenan: A photon transmission study”, Journal of Bioactive and Compatible Polymers, 18(1), 33-44 (2003)

S. Kara, C. Tamerler, O. Pekcan, “Cation Effects on Swelling of κ-Carrageenan: A Photon Transmission Study”, Biopolymers, 70(2), 240-251 (2003)

S. Kara, C. Tamerler, H. Bermek, O. Pekcan, “Cation Effects on Sol-Gel and Gel-Sol Phase Transitions of κ-Carrageenan Water Systems”, International Journal of Biological Macromolecules, 31(4-5), 177-185 (2003)

C. Tamerler, K. Ulgen, Z.I. Onsan, B. Kırdar, “Structured Model for Investigation of Intracellular Components EcoRI Endonuclease from Escherichia coli", Process Biochemistry, 36(7), 621-627 (2001)

C. Tamerler, Z.I. Onsan, B. Kırdar, “A Comparative Study on the Recovery of EcoRI Endonuclease from Two Different Genetically Modified Strains of Escherichia coli”, Turkish Journal of Chemistry, 25(1), 63-71 (2001)

C. Tamerler, B. Ariyo, C. Bucke, T. Keshavarz, “Effect of mannan and alginate oligosaccharides on production in bioreactors of penicillin-G and its biosynthetic intermediates”, Annals of Microbiology 51(1), 53-60 (2001)

C. Tamerler, A. Martinez, T. Keshavarz, “Production of lipolytic enzymes in batch cultures of Ophiostoma piceae” Journal of Chemical Technology & Biotechnology, 76(9), 991-996 (2001)

C. Tamerler, T. Keshavarz, “Lipolytic Enzyme Production in Batch and Fed-batch Cultures of Ophiostoma piceae and Fusarium oxysporum”, Journal Of Chemical Technology & Biotechnology, 75(9), 785-790 (2000)

E. George, C. Tamerler, A. Martinez, M.J. Martinez, T. Keshavarz, “Influence of growth medium composition on the lipolytic enzyme activity of Ophiostoma piliferum (Cartapip™)” Journal of Chemical Technology and Biotechnology, 74(2), 689-694 (1999)

C. Tamerler, T. Keshavarz, “Optimization of agitation for production of swainsonine Metarhizium anisopliae in stirred tank and airlift reactors”, Biotechnology Letters, 21(6), 501-504 (1999)

C. Tamerler, Z.I. Önsan, B. Kırdar, “ Optimization of starting time and period of induction and inducer concentration in the production of EcoRI Restriction Enzyme From Escherichia coli 294 Strain”, Turkish Journal of Chemistry, 22(3), 221-226 (1998)

B. Ariyo, C. Tamerler, C. Bucke, T. Keshavarz, “Enhanced Penicillin Production by Oligosaccharides from Batch Cultures of Penicillium chrysogenum in Stirred-Tank Reactors”, FEMS Microbiology Letters, 166(1), 165-170 (1998)

C. Tamerler, M. Ullah, M.W. Adlard, T. Keshavarz, “Effect of pH on Physiology of Metarhizium anisopliae for Production of Swainsonine”, FEMS Microbiology Letters, 168(1), 17-23 (1998)

C. Tamerler, M.W. Adlard, T. Keshavarz, “Production of swainsonine from Metarhizium anisopliae in stirred tank reactor and in airlift reactor”, Biotechnology Letters, 19(9), 919-922 (1997)

Conference Proceedings and Other Non-Journal Publications

B.T. Karaca, J. Meyer, S.K. VanOosten, M. Richter, C. Tamerler, "Modular peptide based hybrid nanoprobes for targeted bioimaging and biosensing", MRS Proceedings, 1621, 155-161, 2014

E. Yuca, M. Hnilova, A.Y. Karatas, C. Tamerler, “Tailoring Fluoresence Signatures of GFP Nanoparticle Complexes”, New Biotechnology (Elsevier), 29, S156, 2012

O.Pinar, B. Tetik, E. Varisli, C. Tamerler, A. Y. Karatas, “Identification of laccase gene-specific sequences from the white-rot fungus Coriolopsis polyzona MUCL 38443”, New Biotechnology (Elsevier), 29, S94, 2012

B.K. Balcioglu, A.O. Bahadir, O. Ibrahimoglu, H.B. Caliskan, Duygu Hinc, C. Tamerler, B. Erdag, “Genetically engineered bi-functional molecular biosensing probes: recombinant antibody against hepatitis B virus surface antigen on Gold Chips”, New Biotechnology (Elsevier), 29, S32-33, 2012

F.S. Utku, E. Yuca, E. Seckin, G. Goller, M. Sarikaya, A.Y. Karatas, M. Urgen, C. Tamerler, “The effect of surface topography on osteoblasts”, TIPTEKNO 12 Bulletin, in press, 2012

E. Yuca, M. Hnilova, C. Jia, A.Y. Karatas, M. Sarikaya, C. Tamerler, “Single step controlled protein pattering of GFP trough genetically fused metal binding activity”, Current Opinion in Biotechnology, 22(1), S120-S120, 2011

C. Tamerler, “Biology enabled nanotechnology: Biomolecular approaches in materials assembly and synthesis” Current Opinion in Biotechnology, 22(1), S30-S30, 2011

F. Ozmen, E. Varisli, G. Kurt, A.Y. Karatas, C. Tamerler, “Purification and characterization of heterologous laccase isolated from white-rot fungi Pycnoporus sanguineus in S. cerevisiae”, Current Opinion in Biotechnology, 22(1), S84-S84, 2011

G.G. Kurt, A.Y. Karatas, C. Tamerler, “Cloning and heterologous expression of a novel fungal laccase, lcc2, in yeast Pichia pastoris”, Current Opinion in Biotechnology, 22(1), S85-S85, 2011

F.S. Utku, E. Yuca, E. Seckin, G. Goller, M. Sarikaya, A.Y. Karatas, M. Urgen, C. Tamerler, “Biomonitoring hydroxyapatite formation in composite nanotubes using heterofunctional GFP”, TIPTEKNO 11 Bulletin, Paper 74, 327-331, 2011

F.S. Utku, E. Seckin, G. Goller, C. Tamerler, M. Urgen, “Effect of titanium surface properties on electrochemically induced biomineralization”, IEEE, Paper Identifier: 10.1109/BIYOMUT.2010.5479780, 1-6, 2010

G. Zengin, U.O.S. Seker, M. Sarikaya, C. Tamerler, H.V. Demir, "Quantum dot emitters integrated with smart peptides", LEOS Annual Meeting Conference Proceedings of IEEE Lasers and Electro-Optics Society, Paper Identifier: 10.1109/LEOS.2009.5343454, 88-89, 2009

E. Yuca, A.Y. Karatas, M. Gungormus, M. Sarikaya, C. Tamerler, “GFP-based bi-functional proteins for real time monitoring of biomineralization”, FEBS Journal, 275, 374-374, 2008

B. Fischer, L. Mao, M. Gungormus, C. Tamerler, M. Sarikaya, H. Koser, “Ferro-microfluidic device for pathogen detection”, IEEE Nano/microEngineered and Molecular Systems, NEMS, Paper Identifier: 10.1109/NEMS.2008.4484470, 907-910, 2008

A. Sert, N.G. Karaguler, D. Sahin, E.E. Oren, M. Sarikaya, C. Tamerler, “Expression of a bi-functional peptide by using genetic engineering methods for bionanotechnologies”, FEBS Journal, 275, 372-372, 2008

O. Doluca, E.B. Ordu, H.I. Kisakesen, R.B. Sessions, A.R. Clarke, C. Tamerler, N.G. Karaguler, “ Effects of cysteine/cystine engineering on thermal stability of formate dehydrogenase from Candida methylica”, FEBS Journal, 275, 398-398, 2008

G. Zengin, U.O.S. Seker, A. Koc, E. Mutlugun, O. Akyuz, E. Sari, M. Sarikaya, C. Tamerler, H.V. Demir, “Multi-material specific, targeted self-assembly of nanocrystal emitters using genetically engineered peptides on optoelectronic microchips”, IEEE Lasers and Electro-Optics Society, Paper Identifier 10.1109/LEOS.2008.4688579, 241-243, 2008

R. Samudrala, E.E. Oren, C. Cheng, J. Horst, B. Bernard, M. Gungormus, M. Hnilova, H. Fong, C. Tamerler, M. Sarikaya, “Knowledge-based design of inorganic-binding peptides”, FNANO08 Conference Proceedings, 75-80, 2008

U.O.S. Seker, G. Zengin, E. Mutlugun, E. Sari, H.V. Demir, C. Tamerler, M. Sarikaya, “Targeted self-assembly of nanoemitters using genetically engineered inorganic binding peptides”, FEBS Journal 275 (Suppl 1), 97-97, 2008

B. Fischer, L. Mao, M. Gungormus, C. Tamerler, M. Sarikaya, H. Koser, “Biomedical Engineered Ferrofluids”, MRS Proceedings, Paper: 1032-I15-17, 2007

C. Tamerler, M. Sarikaya, “Molecular Biomimetics: Nanotechnology through Biology”, Proceedings of TASSA Annual Conference, 23-24, 2006

X. Xiong, M. Gungormus, C. Tamerler, M. Sarikaya, B. Parviz, "Electronic Control of Binding of Genetically Engineered Polypeptides to Microfabricated Structures", 19th IEEE Proceedings on MicroElectroMechanical Systems (MEMS), 358-361, January, 2006

C. Tamerler, M. Sarikaya, “Protein Based Functional Systems for Nanobiotechnology through Molecular Biology”, Advances in Molecular Medicine, International Journal of Molecular Biology, Biochemistry and Gene Technology, ISSN 1305-2314, 1(S):99-103, 2005

A. Akar, E.U. Akkaya, K. Yesiladali, , G. Celikyilmaz, E.U. Cokgor, D. Orhon, C. Tamerler, Z.P. Cakar, “Growth physiology and biochemical storage characteristics of Microlunatus phosphovorus, a model organism for activated sludge systems”, Environmental Biotechnology-ESEB 2004 Proceedings, (editor: W. Verstraete), ISBN 90 5809 653, 737-740, April, 2004

C. Tamerler, M. Sarikaya, “Molecular Biomimetics: Building Materials the Nature’s Way, One Molecule at a Time”, NBBM Symposium Proceedings, 473-475, 2004

M. Sarikaya, C. Tamerler, A.K.Y. Jen, D.T. Schwartz, B. Traxler, F. Baneyx, “Molecular biomimetics: genetically engineered polypeptides for inorganics and GEPI as molecular building blocks”, (Invited Paper), Nanosensing: Materials And Devices Conference Proceedings of SPIE Vol. 5593, 2004

U.O.S. Seker, E.E. Oren, C. Selcuki, C. Tamerler, M. Sarikaya, “Molecular Modelling of Engineered Noble Metal-Binding Polypeptides”, 15th European Symposium on Quantitative Structure-Activity Relationships & Molecular Modelling Proceedings, 521-524, 2004

B. Ismailoglu, U.O.S. Seker, C. Selcuki, C. Tamerler, M. Sarikaya, “Conformational Behaviuor Analysis of Inorganic Surface Specific Polypeptides Selected Based on Molecular Biomimetic Approach”, 15th European Symposium on Quantitative Structure-Activity Relationships & Molecular Modelling Proceedings, 562-563, 2004

C. Tamerler, S. Dincer, D. Heidel, N. Karaguler, M. Sarikaya, “Combinatorial Peptide Libraries for Selecting Inorganic-Binding Proteins: A Step in Molecular Biomimetics”, Material Research Society. Symposium Proceedings, Vol. 773, No.8.1.1, 2003

C. Tamerler, M. Petruccioli, F. Federici, C. Bucke, T. Keshavarz, “Enhancement of metabolic activities by elicitors in fungal cultures”, AIDIC Conference Series, Vol. 4, 395-404, 1999

C. Tamerler, T. Keshavarz, “Advances in Foood Technology”, AIDIC Conference Series, Vol.4, 251-258, 1999

C. Tamerler, M.W. Adlard, T. Keshavarz, “Microbial overproduction of antitumor agent, swainsonine”, AIDIC Conference Series, Vol. 2, 373-381, 1997

Book Chapters

B. T. Karaca, M. Hnilova, C. Tamerler, “Addressable Biological Functionalization of Inorganics: Materials Selevtive fusion Proteins in Bio-nanotechnology” in “Bio-Inspired Nanotechnology: From Surface Analysis to Applications”, (Editors: Tiffany R. Walsh and Marc R. Knecht) Springer, USA, in print (2014).

M. Hnilova, D. Yucesoy, M. Sarikaya, C. Tamerler, “Engineered Peptides for Controlled Biological Functionalization of Surfaces”, Biomaterials Science: Processing, Properties and Applications III in Ceramic Eng. & Science Proceedings (Editors: R. Narayan, A. Bandyopadhyay, S. Bose) ACerS Wiley, USA (2013).

K. Yesiladali, Z.P. Cakar, C. Tamerler, “Fermentation Technologies; Bioreactors, and Downstream Processing” in Food Biotechnology (Editor: Necla Aran), Nobel Book Publishers Ltd., Ankara, Turkey (2010).

C. Tamerler and M. Sarikaya, "Molecular Biomimetics: Linking peptides with inorganic structures" in Microbial Bionanotechnology: Biological self-assembly systems & biopolymer-based nanostructures, (Editor: B. Rehm), Chapter 8 (pp: 191-221), Horizon, London, (2006).

M. Sarikaya and C. Tamerler, “Molecular Biomimetics: Building materials the nature’s way: one molecule at a time,” Chapter 5, 119-134, in Nanofabrication towards Biomedical Applications, (Editors: C. S. S. R. Kumar, J. Hormes, and C. Leuschner) Wiley-VCH, Weinheim, Germany (2005).

M. Sarikaya and C. Tamerler, “Materials assembly using engineered polpeptides,” in Foundations of Nanoscience: Self-assembled Architectures and Devices,” (Editor: John Reif) Science Technica Inc. Washington, DC, USA (2004).